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## Hierarchy For All Packages

Package Hierarchies:
  Algorithm, com.rie.rieps.engine, com.rie.rieps.engine.color, com.rie.rieps.engine.factories, com.rie.rieps.engine.fonts, com.rie.rieps.engine.image, com.rie.rieps.exception, com.rie.rieps.simpletest, Exceptions, FitnessEvaluation, FitnessEvaluation.BinomialProblem, FitnessEvaluation.Canvas, FitnessEvaluation.externalInterpreters.ParityProblem, FitnessEvaluation.externalInterpreters.SantaFeAntTrail, FitnessEvaluation.externalInterpreters.SymbolicRegression, FitnessEvaluation.HelloWorld, FitnessEvaluation.LSystem, FitnessEvaluation.MaxProblem, FitnessEvaluation.ParityProblem, FitnessEvaluation.PatternMatch, FitnessEvaluation.RoyalTree, FitnessEvaluation.SantaFeAntTrail, FitnessEvaluation.Sudoku, FitnessEvaluation.SymbolicRegression, FitnessEvaluation.util, Fractal, Individuals, Individuals.FitnessPackage, Individuals.Populations, Main, Main.Tutorials, Mapper, Operator, Operator.Operations, Operator.Operations.ContextSensitiveOperations, Parameter, UI, Util, Util.Random, Util.Statistics, Util.Structures

## Class Hierarchy

- java.lang.Object
  - Algorithm.AbstractAlgorithm (implements Algorithm.Algorithm)
    - Algorithm.MyFirstSearchEngine
  - java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    - java.util.AbstractList<E> (implements java.util.List<E>)
      - java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        - Individuals.Genotype
        - Fractal.LSystem2Config.Indexes
        - Individuals.Phenotype
        - Mapper.Production
        - Mapper.Rule
        - Algorithm.SimplePipeline (implements Algorithm.Pipeline)
        - Util.Structures.TreeNode<E>
          - Mapper.DerivationNode
  - Individuals.AbstractIndividual (implements Individuals.Individual)
    - Individuals.GEIndividual
  - Individuals.FitnessPackage.BasicFitness (implements Individuals.FitnessPackage.Fitness)
  - Util.Structures.BinaryNode<T>
  - FitnessEvaluation.BinomialProblem.BinomialFunkBSF
  - FitnessEvaluation.ParityProblem.BooleanInterpreter (implements FitnessEvaluation.FitnessFunction)
  - Operator.Collector (implements Operator.Operator)
  - java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    - java.awt.Container
      - javax.swing.JComponent (implements java.io.Serializable)
        - javax.swing.JPanel (implements javax.accessibility.Accessible)
          - com.rie.rieps.engine.fonts.AskForUnknownFontPanel
          - Fractal.FinalProtoComp (implements java.awt.event.ActionListener)
          - Fractal.LargeLSystem
          - Fractal.LSystem
          - Fractal.LSystem2Control
          - Fractal.LSystem2Panel
            - Fractal.LSystem2PanelSelect
          - Fractal.ProtoComp
      - java.awt.Window (implements javax.accessibility.Accessible)
        - java.awt.Frame (implements java.awt.MenuContainer)
          - javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            - Fractal.Enlarged (implements java.awt.event.ActionListener)
            - Fractal.FinalGuiComp (implements java.awt.event.ActionListener)
            - Fractal.GuiComp (implements java.awt.event.ActionListener, java.util.Comparator<T>, Fractal.LSystem2Config.SelectAction)
            - UI.LSystemViewer
  - Util.ConstantGenerator
  - Util.Constants
  - Operator.Operations.CrossoverOperation (implements Operator.Operations.Operation, Util.Random.Stochastic)
    - Operator.Operations.SinglePointCrossover
    - Operator.Operations.ContextSensitiveOperations.SubtreeCrossover
  - Fractal.Cursor
  - com.rie.rieps.engine.DeviceParameter
  - com.rie.rieps.engine.Document
  - Operator.Operations.EliteReplacementOperation (implements Operator.Operations.Operation)
  - Util.Enums
  - FitnessEvaluation.externalInterpreters.ParityProblem.EvenFiveParBSF
  - Main.Experiment
  - javax.swing.filechooser.FileFilter
    - Util.FileNameExtensionFilter
  - Operator.Operations.FitnessEvaluationOperation (implements Operator.Operations.Operation)
  - com.rie.rieps.engine.Frame
  - Util.GenotypeHelper
  - com.rie.rieps.simpletest.GenPSFile
  - Util.GEVAHelper
  - Mapper.Grammar (implements Mapper.Mapper)
    - Mapper.ContextFreeGrammar
      - Mapper.GEGrammar (implements Parameter.ParameterI)
  - com.rie.rieps.engine.color.Gray (implements com.rie.rieps.engine.color.Color)
  - Operator.Operations.GrowInitialiser (implements Operator.Operations.CreationOperation, Util.Random.Stochastic)
    - Operator.Operations.FullInitialiser
  - com.rie.rieps.engine.image.ImageFactory
  - Util.Statistics.IndividualCatcher (implements Parameter.ParameterI)
  - FitnessEvaluation.InterpretedFitnessEvaluation (implements FitnessEvaluation.FitnessFunction)
    - FitnessEvaluation.InterpretedFitnessEvaluationBSF
      - FitnessEvaluation.BinomialProblem.BinomialBSF
      - FitnessEvaluation.externalInterpreters.ParityProblem.EvenFiveParityFitnessBSF
      - FitnessEvaluation.HelloWorld.HelloWorldBSF
      - FitnessEvaluation.externalInterpreters.SantaFeAntTrail.SantaFeAntTrailBSF
      - FitnessEvaluation.externalInterpreters.SymbolicRegression.SymbolicRegressionBSF
    - FitnessEvaluation.InterpretedJScheme
      - FitnessEvaluation.BinomialProblem.BinomialJScheme (implements Util.Random.Stochastic)
      - FitnessEvaluation.externalInterpreters.SymbolicRegression.SymbolicRegressionJScheme (implements Util.Random.Stochastic)
  - com.rie.rieps.engine.Job
  - com.rie.rieps.engine.LineFormat
  - Fractal.LSystem2
  - Fractal.LSystem2Config
  - Fractal.LSystem2Renderer
    - Fractal.LSystem2FDBoxCounting (implements Fractal.FractalDimension)
    - Fractal.PSLSystem2
  - Fractal.LSystem2State
  - FitnessEvaluation.LSystem.LSystemDimension (implements FitnessEvaluation.FitnessFunction)
  - FitnessEvaluation.LSystem.LSystemInitialiser (implements FitnessEvaluation.FitnessFunction)
  - FitnessEvaluation.MaxProblem.MaxProblemInterpreter (implements FitnessEvaluation.FitnessFunction, Util.Random.Stochastic)
  - Util.Random.MersenneTwisterFast (implements java.lang.Cloneable, Util.Random.RandomNumberGenerator, java.io.Serializable)
  - Operator.Operations.MutationOperation (implements Operator.Operations.Operation, Util.Random.Stochastic)
    - Operator.Operations.IntFlipByteMutation
    - Operator.Operations.IntFlipFitness
    - Operator.Operations.IntFlipMutation
    - Operator.Operations.ContextSensitiveOperations.NodalMutation
    - Operator.Operations.ContextSensitiveOperations.StructuralMutation
    - Operator.Operations.ContextSensitiveOperations.SubtreeMutation
  - Util.Structures.NimbleTree<E>
    - Mapper.DerivationTree (implements Mapper.Derivation)
      - Mapper.ContextualDerivationTree
  - Operator.OperatorModule (implements Operator.Operator, Util.Random.Stochastic)
    - Operator.CrossoverModule
    - Operator.FitnessEvaluator
    - Operator.JoinOperator
      - Operator.EliteReplacementOperator
      - Operator.MeritReplacementStrategy
      - Operator.SimpleReplacementStrategy
    - Operator.MutationOperator
    - Operator.SourceModule (implements Parameter.ParameterI)
      - Operator.Initialiser (implements Operator.Creator)
        - Operator.RampedHalfAndHalfInitialiser
      - Operator.SplitOperator
        - Operator.SelectionScheme
  - Util.Structures.Operators<E>
  - com.rie.rieps.engine.Page
  - FitnessEvaluation.Canvas.Paint (implements FitnessEvaluation.FitnessFunction)
  - Util.PathTools
  - com.rie.rieps.engine.factories.PSFactory (implements com.rie.rieps.engine.factories.Factory)
  - com.rie.rieps.engine.fonts.PSFont
  - com.rie.rieps.engine.fonts.PSFontFile
  - com.rie.rieps.engine.fonts.PSFontFinder
  - Util.Structures.Queue<T>
  - Operator.Operations.RandomInitialiser (implements Operator.Operations.CreationOperation, Util.Random.Stochastic)
  - FitnessEvaluation.BinomialProblem.Range
  - FitnessEvaluation.util.Range
  - Operator.Operations.ReplacementOperation (implements Operator.Operations.Operation)
  - Util.Structures.ReversePolish
  - com.rie.rieps.engine.color.RGBToGray (implements com.rie.rieps.engine.color.Color)
  - FitnessEvaluation.RoyalTree.RoyalTree (implements FitnessEvaluation.FitnessFunction)
  - FitnessEvaluation.SantaFeAntTrail.SantaFeAntTrailInterpreter (implements FitnessEvaluation.FitnessFunction)
  - Operator.Operations.SelectionOperation (implements Operator.Operations.Operation)
    - Operator.Operations.EliteOperationSelection
    - Operator.Operations.LSystemSelect (implements Util.Random.Stochastic)
    - Operator.Operations.RouletteWheel (implements Util.Random.Stochastic)
      - Operator.Operations.ProportionalRouletteWheel (implements Util.Random.Stochastic)
      - Operator.Operations.ScaledRouletteWheel (implements Util.Random.Stochastic)
    - Operator.Operations.TournamentSelect (implements Util.Random.Stochastic)
    - Operator.Operations.UserSelect
      - Operator.Operations.SimpleUserSelect
  - Operator.Operations.ShapeGrammarSelect (implements Operator.Operations.Operation)
  - Individuals.Populations.SimplePopulation (implements Individuals.Populations.Population)
  - com.rie.rieps.engine.image.SmallGrayImage (implements com.rie.rieps.engine.image.Image)
  - Util.Statistics.StatCatcher
  - Main.State (implements java.io.Serializable)
    - Main.AbstractRun
      - Main.Run
      - Main.Tutorials.Tutorial4
      - Main.Tutorials.Tutorial5
      - Main.Tutorials.Tutorial6
      - Main.Tutorials.Tutorial7
  - Util.Structures.StaticIntIterator (implements Util.Structures.IntIterator)
  - Util.Structures.StaticIntList (implements Util.Structures.IntList)
    - Individuals.GEChromosome (implements Individuals.Chromosome)
  - Operator.Operations.StatisticsCollectionOperation (implements Operator.Operations.Operation, Operator.Operations.OutputI)
  - FitnessEvaluation.Sudoku.SudokuFit (implements FitnessEvaluation.FitnessFunction)
  - Mapper.Symbol
  - FitnessEvaluation.SymbolicRegression.SymbolicRegressionInterpreter (implements FitnessEvaluation.FitnessFunction, Util.Random.Stochastic)
  - FitnessEvaluation.externalInterpreters.SymbolicRegression.SymRegFunkBSF
  - com.rie.rieps.engine.TextParameter
  - java.lang.Throwable (implements java.io.Serializable)
    - java.lang.Exception
      - Exceptions.InitializationException
      - Exceptions.MalformedGrammarException
      - com.rie.rieps.exception.RiepsException
      - java.lang.RuntimeException
        - java.lang.IllegalArgumentException
          - Exceptions.BadParameterException
  - FitnessEvaluation.SantaFeAntTrail.Trail
    - FitnessEvaluation.SantaFeAntTrail.LosAltosTrail
    - FitnessEvaluation.SantaFeAntTrail.SanMateoTrail
  - Mapper.TreeMill
  - com.rie.rieps.simpletest.VerySimpleExample
  - FitnessEvaluation.PatternMatch.WordMatch (implements FitnessEvaluation.FitnessFunction)
  - FitnessEvaluation.HelloWorld.WorldWriter

## Interface Hierarchy

- Algorithm.Algorithm
- Individuals.Chromosome
- java.lang.Cloneable
  - Individuals.Individual (also extends java.lang.Comparable<T>)
- com.rie.rieps.engine.color.Color
- java.lang.Comparable<T>
  - Individuals.FitnessPackage.DoubleFitness
  - Individuals.FitnessPackage.Fitness
    - Individuals.FitnessPackage.DoubleFitness
    - Individuals.FitnessPackage.IntFitness
  - Individuals.Individual (also extends java.lang.Cloneable)
  - Individuals.FitnessPackage.IntFitness
- Operator.Creator
- Mapper.Derivation
- com.rie.rieps.engine.factories.Factory
- Fractal.FractalDimension
- com.rie.rieps.engine.image.Image
- Util.Structures.IntIterator
- Util.Structures.IntList
- Fractal.LSystem2Config.SelectAction
- Mapper.Mapper
- Operator.Module
  - Operator.Operator
- Operator.Operations.OutputI
- Parameter.ParameterI
  - Operator.Operations.CreationOperation
  - FitnessEvaluation.FitnessFunction
  - Operator.Operations.Operation
    - Operator.Operations.CreationOperation
- Algorithm.Pipeline
- Individuals.Populations.Population
- Util.Random.RandomNumberGenerator
- Util.Random.Stochastic

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - Util.Enums.SymbolType

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